rs6191591 SNP Detail

Summary

• ID
  rs6191591
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80818886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGATACACT AAATTCCTTT TGTAAGTCCT TTACAAAAAA
  TACTTCAGAA TAAATGTCAT GTACCATGCA AATTTACTTC CACTGTGTAT AGCAATGTAA
  R
  TATAATAGAC CTCAAGATAA TAGTTATCTG CTTCTTAATG ATTCTCATTT CAGATCATTT
  TAAAATCTAC CCTTTGAACT TGTATTTGCT CAAAGCATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8597201	WI_WGS_3_81599786	WI	MOUSE	f	SNP	A	G
ss320812964	CHEV_3_80715501	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6191591					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80818886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13282	CpG island 13282	1491 bp proximal
Glrb	glycine receptor, beta subunit	within coordinates
Gm54207	predicted gene, 54207	959 bp upstream
Gm65109	predicted gene, 65109	1642 bp upstream
Rr578673	regulatory region 578673	1228 bp proximal
Rr578674	regulatory region 578674	1653 bp proximal
Rr578675	regulatory region 578675	1939 bp proximal
Tssr33773	transcription start site region 33773	1963 bp downstream