rs6191661 SNP Detail

Summary

• ID
  rs6191661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58110568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTCATTC CCAAAGACGG
  CAATACTTTA TCTGTAGGCG TCATTAAGAG AATTGAGACT GCCGTGAAAG AAGGGGAGGT
  AGTGAAAGTG GTTTCTATAG TTAAAGAGAT CATACAGAAC GTTTCCAGAA ACAAAATAAA
  GATCGCTGTG ACTGGGGACT CTGGCAATGG CATGTCATCT TTCATCAATG CCCTTAGGCT
  Y
  ATCGGACACG AAGAGAAAGA TTCAGCTCCC ACTGGGGTGG TGAGAACCAC CCAGAAACCA
  ACCTGTTACT TTTCCTCCCA CTTTCCCTAT GTGGAGCTGT GGGACCTGCC TGGCTTAGGG
  GCCACAGCCC AGAGTGTGGA GAGCTACCTG GAAGAGATGC AGATCAGCAT ATACGACCTT
  ATCATCATCG TAGCTTCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8597271	WI_WGS_11_58731113	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6191661					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58110568 () rs orientation: forward

Symbol	Name	Function Class
Irgm2	immunity-related GTPase family M member 2	Coding-Synonymous
Tssr101708	transcription start site region 101708	437 bp upstream
Tssr101709	transcription start site region 101709	739 bp upstream
Tssr101710	transcription start site region 101710	774 bp upstream
Tssr101711	transcription start site region 101711	935 bp upstream
Tssr101712	transcription start site region 101712	989 bp upstream
Tssr101713	transcription start site region 101713	1307 bp upstream
Tssr101714	transcription start site region 101714	1356 bp upstream