rs6191739 SNP Detail

Summary

• ID
  rs6191739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58110613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCA GCTCCCACTG GGGTGGTGAG
  R
  ACCACCCAGA AACCAACCTG TTACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8597349	WI_WGS_11_58731158	WI	MOUSE	f	SNP		A	G
ss132191983	ENSMUSSNP4313946	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323688630	CHEV_11_58033289	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6191739					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58110613 () rs orientation: forward

Symbol	Name	Function Class
Irgm2	immunity-related GTPase family M member 2	Coding-Synonymous
Tssr101708	transcription start site region 101708	392 bp upstream
Tssr101709	transcription start site region 101709	694 bp upstream
Tssr101710	transcription start site region 101710	729 bp upstream
Tssr101711	transcription start site region 101711	890 bp upstream
Tssr101712	transcription start site region 101712	944 bp upstream
Tssr101713	transcription start site region 101713	1262 bp upstream
Tssr101714	transcription start site region 101714	1311 bp upstream