rs6191854 SNP Detail

Summary

• ID
  rs6191854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114859032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTCTGAG TACTCTTGTT
  TTTATGGAAT TATTCTTTCA TTAAAAAAAT AATATAATAT ACAATGAATT ATATTTTTTT
  ACTATACTGA TGTAGGGATG AATTCAGTTT TTGACTCATT CTTATATATT ACTTAATTTT
  ACATTCAATT TCTTTGAATT TTAAGAGAAG AAAAGAAAAA TAAAAAAGAA GTAGAAGACA
  Y
  GAATTGGGGA GGCAGATGTG GTTGGGGGTT CTGGGAGGAA AATGGAGGGG TATGGAAGGT
  GGGTGTTATT GTAATCACTT ACAATAGATA CATTGTACTC ATGTGTGACA TTAGGGAAGG
  ATATATGAAT TGTAAAGCCC ATCATTAAGT TTGTGTGTCA GACACTATGC CAGTCTTTGG
  AGAAGCCTGC CTTGCTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8597465	WI_WGS_8_114067678	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6191854					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114859032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21082	CpG island 21082	1158 bp proximal
Gm56821	predicted gene, 56821	within coordinates
Nudt7	nudix hydrolase 7	1282 bp upstream
Rr401147	regulatory region 401147	1117 bp upstream
Rr670351	regulatory region 670351	1301 bp distal
Rr670352	regulatory region 670352	806 bp distal
Rr670353	regulatory region 670353	618 bp proximal
Rr670354	regulatory region 670354	1361 bp proximal
Tssr79531	transcription start site region 79531	1277 bp upstream
Tssr79532	transcription start site region 79532	1309 bp upstream
Tssr79533	transcription start site region 79533	1343 bp upstream
Tssr83006	transcription start site region 83006	1282 bp upstream
Tssr83007	transcription start site region 83007	697 bp upstream
Tssr83008	transcription start site region 83008	688 bp upstream