rs6191943 SNP Detail

Summary

• ID
  rs6191943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:84086849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAGAGAA CATTAATTTT
  TCTAGCTATA ATCATAGAAT AAAAAGTACT TTATCATTTG CCAAACACAT TAATCACGAA
  TGTAGAGAAC CCTCTAAGAA AAAAAAAAAG TTTATCAGCT TTTTTACCCC AAAACTAAGA
  GGCTGTAGAC TCTCCTTTTT TCCTATAAGG AACAGCTTTT CCAGCAGGGG CCCTCTTGCC
  R
  TGTGCCTGTT TCCTGGTTGA AGCATGTGGC CGCTCTCGGC TTTGCAGATA AAGTTTTTTT
  TTTTTTAGCC ATCTTTATTA TCCAACATAA AACATAGAAC ATTCATTCAT TCAGACTGGA
  CACGAACATA CATGAAATTG AACAAATGAA CAGATTGGTG CACCAGACAT TAGACAAAGA
  CACAAAAGGG GCAGAGTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8597554	WI_WGS_12_78728361	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6191943					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84086849 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4732463B04Rik	RIKEN cDNA 4732463B04 gene			within coordinates
Acot4	acyl-CoA thioesterase 4			Intron
				Noncoding-Transcript-Variant
Gm40474	predicted gene, 40474			within coordinates
Gm49366	predicted gene, 49366			Intron
Rr469550	regulatory region 469550			1554 bp distal
Tssr114309	transcription start site region 114309			1696 bp downstream
Tssr114310	transcription start site region 114310			1640 bp downstream