rs6192017 SNP Detail

Summary

• ID
  rs6192017
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80818901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTTTGTAA GTCCTTTACA AAAAATACTT CAGAATAAAT
  GTCATGTACC ATGCAAATTT ACTTCCACTG TGTATAGCAA TGTAAATATA ATAGACCTCA
  W
  GATAATAGTT ATCTGCTTCT TAATGATTCT CATTTCAGAT CATTTTAAAA TCTACCCTTT
  GAACTTGTAT TTGCTCAAAG CATGGGCCCA CAGCATCCA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8597628	WI_WGS_3_81599801	WI	MOUSE	f	SNP	A	T
ss320812965	CHEV_3_80715516	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6192017					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80818901 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13282	CpG island 13282	1476 bp proximal
Glrb	glycine receptor, beta subunit	within coordinates
Gm54207	predicted gene, 54207	944 bp upstream
Gm65109	predicted gene, 65109	1627 bp upstream
Rr578673	regulatory region 578673	1213 bp proximal
Rr578674	regulatory region 578674	1638 bp proximal
Rr578675	regulatory region 578675	1924 bp proximal
Tssr33773	transcription start site region 33773	1948 bp downstream