rs6192035 SNP Detail

Summary

• ID
  rs6192035
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80818917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACAAAAAAT ACTTCAGAAT AAATGTCATG TACCATGCAA
  ATTTACTTCC ACTGTGTATA GCAATGTAAA TATAATAGAC CTCAAGATAA TAGTTATCTG
  M
  TTCTTAATGA TTCTCATTTC AGATCATTTT AAAATCTACC CTTTGAACTT GTATTTGCTC
  AAAGCATGGG CCCACAGCAT CCAATTAAAG TTGCATATC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8597646	WI_WGS_3_81599817	WI	MOUSE	f	SNP	C	A
ss320812966	CHEV_3_80715532	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6192035					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80818917 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13282	CpG island 13282	1460 bp proximal
Glrb	glycine receptor, beta subunit	within coordinates
Gm54207	predicted gene, 54207	928 bp upstream
Gm65109	predicted gene, 65109	1611 bp upstream
Rr578673	regulatory region 578673	1197 bp proximal
Rr578674	regulatory region 578674	1622 bp proximal
Rr578675	regulatory region 578675	1908 bp proximal
Tssr33773	transcription start site region 33773	1932 bp downstream