rs6192315 SNP Detail

Summary

• ID
  rs6192315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58110738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCT GGAAGAGATG CAGATCAGCA
  Y
  ATACGACCTT ATCATCATCG TAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8597927	WI_WGS_11_58731283	WI	MOUSE	f	SNP							T		C
ss37197553	NES08428833	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	C	C	C	C	C	C
ss132191991	ENSMUSSNP5039903	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6192315					SNP	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37197553	NES08428833	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58110738 () rs orientation: forward

Symbol	Name	Function Class
Irgm2	immunity-related GTPase family M member 2	Coding-NonSynonymous
Tssr101708	transcription start site region 101708	267 bp upstream
Tssr101709	transcription start site region 101709	569 bp upstream
Tssr101710	transcription start site region 101710	604 bp upstream
Tssr101711	transcription start site region 101711	765 bp upstream
Tssr101712	transcription start site region 101712	819 bp upstream
Tssr101713	transcription start site region 101713	1137 bp upstream
Tssr101714	transcription start site region 101714	1186 bp upstream