rs6192353 SNP Detail

Summary

• ID
  rs6192353
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:85870426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATACTCC CTATGTCAAT
  ACTGTGACCT TTTTGAGGGT TCAGATTTGT ATTCCCCAGG AGCCAGTTTT TGCCACTGTT
  AGGGTGACCT TGCCCCTATT GAGAATGTGT GCTGGACTCA TAAATCTGTA ATGTTTTCTG
  TCATAATCAG AGAGCTTAAA AGTCCTCAGA ACCATATTTA TCTTTGTACT AGGTAGGAGC
  Y
  TGCCATGAGT AAACATTTCA CACTCTAAAG CAGGTTTTAT GCTCATGTTA CTAAAGATAA
  GGAAATAGTT CTAGATAAGG CTAAATCATT TCAGTAGAGT AGTTGAGGGA ATCAGTAGAG
  TAGATCATTT GACTTTTAAA AACAACCTTA TGTAGGGGCC TAGCTTAGAT TCTTGTTCTT
  TATTAAATAT GGAACAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8597965	WI_WGS_10_86204184	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6192353					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:85870426 () rs orientation: forward

Symbol	Name	Function Class
Fbxo7	F-box protein 7	within coordinates
Rr220687	regulatory region 220687	225 bp distal
Rr229206	regulatory region 229206	827 bp distal
Tssr94946	transcription start site region 94946	1733 bp downstream
Tssr94947	transcription start site region 94947	1586 bp downstream
Tssr94948	transcription start site region 94948	1556 bp downstream
Tssr94949	transcription start site region 94949	1532 bp downstream
Tssr94950	transcription start site region 94950	1519 bp downstream
Tssr94951	transcription start site region 94951	1494 bp downstream