rs6192385 SNP Detail

Summary

• ID
  rs6192385
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51366295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATA GGGCTTCAAA AACGGAAGCT
  M
  CAGTGAAAAA GGAAGTGCTA AGCCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss8597997	WI_WGS_14_42992987	WI	MOUSE	f	SNP							A		C
ss49182493	NES12491409	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C		C		C	C		C	C		C
ss324621296	CHEV_14_51748513	CHEVERUD	SCREENING_POP	f	SNP												C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs6192385					SNP	C	C	C	C	A	C	A	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182493	NES12491409	PERLEGEN	MM_PANEL	f	SNP	A/C
ss139475197	ENSMUSSNP2719362	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51366295 () rs orientation: forward

Symbol	Name	Function Class
Rnase6	ribonuclease, RNase A family, 6	within coordinates
Rr404085	regulatory region 404085	within coordinates
Rr491778	regulatory region 491778	261 bp distal
Rr491779	regulatory region 491779	within coordinates
Tssr125412	transcription start site region 125412	67 bp upstream
Tssr125413	transcription start site region 125413	92 bp upstream
Tssr125414	transcription start site region 125414	142 bp upstream
Tssr125415	transcription start site region 125415	169 bp upstream
Tssr125416	transcription start site region 125416	201 bp upstream
Tssr125417	transcription start site region 125417	217 bp upstream
Tssr125418	transcription start site region 125418	247 bp upstream
Tssr125419	transcription start site region 125419	280 bp upstream