rs6192754 SNP Detail

Summary

• ID
  rs6192754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106111292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCATATT TGTGTTGATG
  CTCTAGAATT GTTATTCCAG TGAGCTGTAC AGGTAAGAAG GACCTTGATA GGTCAATGTC
  AATAACAGAT TTTGTGTGGG AGAACCCAAG TAGAGGTAAG AACTCCATCA GACTGCTTGA
  TTTTCTTTGG AACCCTGGGC AATATGGGTG GTTAAAGTTA TTTACTGCCA CAATGCAACA
  Y
  CTAATTCTAG TCTGACTAAC TGGAGAGCAG TTAAATTGAA GGGAGTGACA GAAACATAAA
  TTGGTATTTT GAAGATGGTT TTGCTGAGTG TGTGTACTTC AGGAGCTCTG TTCTTTGATG
  TGACTTTCCT TGATTACACA GTATTAACAG ACACAGTGCT GTTCAGCCAA AGGAAGTAGA
  AATTCATTTT GTTTGCAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8598368	WI_WGS_11_107007914	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6192754					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106111292 () rs orientation: forward

Symbol	Name	Function Class
Ddx42	DEAD box helicase 42	within coordinates
Rr242830	regulatory region 242830	1412 bp proximal
Rr245973	regulatory region 245973	1491 bp distal