rs6192779 SNP Detail

Summary

• ID
  rs6192779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58110780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCGT AGCTTCTGAG CAGTTCAGCT
  Y
  AAATCATGTG AAGCTGGCCA TAACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8598393	WI_WGS_11_58731325	WI	MOUSE	f	SNP		T	C
ss132191995	ENSMUSSNP613023	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6192779					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58110780 () rs orientation: forward

Symbol	Name	Function Class
Irgm2	immunity-related GTPase family M member 2	Coding-NonSynonymous
Tssr101708	transcription start site region 101708	225 bp upstream
Tssr101709	transcription start site region 101709	527 bp upstream
Tssr101710	transcription start site region 101710	562 bp upstream
Tssr101711	transcription start site region 101711	723 bp upstream
Tssr101712	transcription start site region 101712	777 bp upstream
Tssr101713	transcription start site region 101713	1095 bp upstream
Tssr101714	transcription start site region 101714	1144 bp upstream