rs6192782 SNP Detail

Summary

• ID
  rs6192782
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:62010996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTCATTT CTGTGAGAAG
  GTGTGCTCAT TTCGAAGATG TCTTGTGAAC TCCAGCCATT TGTTTTCCTC TCCTACACTG
  CCAGGGACCC CTGGCCAGAC TTTCCTGCAG CCTTAGGACC CTGTGTCTTT CTGCTTTACT
  TCTCTGTCTG TGATAGGGTG GCACCGTGTT TTTTCCTTAG GACCCAGATT GGCATGTATT
  R
  AAGGCATACT TTGTGCAGAT GGAGACTGGT AGTCTGTCCT CAGAGCAGCA GCCTAACCAG
  TGTGTGGCTC AGCATGAAGA CATGTGAGTC AGTTTCCTCC CTAGCATTGA GCCAGTGAGA
  ATCCACACCC AGACCTCTGC CTGCCACCCT AATGCAGCTC TTGTTTACAT AGGCCAGAGG
  TGCCCCTTCT CATGGGTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8598396	WI_WGS_15_62583738	WI	MOUSE	f	SNP						G		A
ss48004630	NES12068323	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G		G		G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6192782					SNP	G	G	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48004630	NES12068323	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:62010996 () rs orientation: forward

Symbol	Name	Function Class
Pvt1	Pvt1 oncogene	within coordinates
Rr303301	regulatory region 303301	1596 bp distal
Rr313892	regulatory region 313892	within coordinates