rs6192817 SNP Detail

Summary

• ID
  rs6192817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114859160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG ACATTAGGGA AGGATATATG
  R
  ATTGTAAAGC CCATCATTAA GTTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8598431	WI_WGS_8_114067806	WI	MOUSE	f	SNP			A	G
ss46271205	mCV24161354	ABI	CRAMUS_MOUSE	f	SNP	G	A	A		A
ss145783800	ENSMUSSNP1241443	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6192817					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114859160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21082	CpG island 21082	1030 bp proximal
Gm56821	predicted gene, 56821	within coordinates
Nudt7	nudix hydrolase 7	1154 bp upstream
Rr401147	regulatory region 401147	989 bp upstream
Rr670351	regulatory region 670351	1429 bp distal
Rr670352	regulatory region 670352	934 bp distal
Rr670353	regulatory region 670353	490 bp proximal
Rr670354	regulatory region 670354	1233 bp proximal
Tssr79531	transcription start site region 79531	1149 bp upstream
Tssr79532	transcription start site region 79532	1181 bp upstream
Tssr79533	transcription start site region 79533	1215 bp upstream
Tssr83006	transcription start site region 83006	1410 bp upstream
Tssr83007	transcription start site region 83007	825 bp upstream
Tssr83008	transcription start site region 83008	816 bp upstream