rs6193269 SNP Detail

Summary

• ID
  rs6193269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:52361536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTCTCC TTCTTTCAGA
  TCAAGGTGTG AGCTCAGAGT TCTACCTGTT GTCATGTTTT TTTGTCCCAC CATCATGGAT
  GCTAACTCTC TGAAACTATA AGCCCAATTA AAAGCTTTCT TTTATATAAG TTGTCTAAAT
  TGTAGTGTTT GGGTCCAACG ATAGTAAAGT AACTAAGACA GTTAAAGTCT TTTGGAGGCT
  Y
  AAAGCCTTCC ACAAGTGACA CACCATTGCC TCCACTAAGG TAATCCTTCC TTGTAATCCT
  TCCAAGATAC TTCCACTAAC TGAAGACCAA GTATTCAACA TATGAGTTTA TGCAGAGTAC
  TCTCATTCAG ACTGAACAGG TACAATTTCT ATTGTACCAG TGAGCATATC TTGCCAGGCT
  GAACATTCCC TGTTGGGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8598884	WI_WGS_X_38890929	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6193269					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:52361536 () rs orientation: forward

Symbol	Name	Function Class
Pabir3	PABIR family member 3	765 bp upstream
Tssr160962	transcription start site region 160962	759 bp upstream
Tssr160963	transcription start site region 160963	786 bp upstream