rs6193282 SNP Detail

Summary

• ID
  rs6193282
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:62011067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACACTGC CAGGGACCCC
  TGGCCAGACT TTCCTGCAGC CTTAGGACCC TGTGTCTTTC TGCTTTACTT CTCTGTCTGT
  GATAGGGTGG CACCGTGTTT TTTCCTTAGG ACCCAGATTG GCATGTATTG AAGGCATACT
  TTGTGCAGAT GGAGACTGGT AGTCTGTCCT CAGAGCAGCA GCCTAACCAG TGTGTGGCTC
  R
  GCATGAAGAC ATGTGAGTCA GTTTCCTCCC TAGCATTGAG CCAGTGAGAA TCCACACCCA
  GACCTCTGCC TGCCACCCTA ATGCAGCTCT TGTTTACATA GGCCAGAGGT GCCCCTTCTC
  ATGGGTCTGC CAATCCCCAA ATACGGCCAC AGCCAGAAAG TGAGAGGGTG CCCCTTATAT
  AAGGCTCTGT GTGCTGGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8598897	WI_WGS_15_62583809	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6193282					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:62011067 () rs orientation: forward

Symbol	Name	Function Class
Pvt1	Pvt1 oncogene	within coordinates
Rr303301	regulatory region 303301	1667 bp distal
Rr313892	regulatory region 313892	within coordinates