rs6193339 SNP Detail

Summary

• ID
  rs6193339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119349995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCGCCGCC GCCTCCGCTG
  CCTCCTCCGC CGCCTCCGCC CAGCCAATCA GCACGTCGCG ACGCCCGGGG AGGACCCGGC
  CCGGAGCCTG CGGAGCTGCG CAGCCTGCGG CGGCCGGGCG GGGCTGGGGC GACCCCGGGA
  ACCGATGGGC CACTGGCTGG GTAGGCGCGG TGCTGCTCCC CCAGAGAAAA GTGCGAGTCT
  Y
  GGTTGCACCA CCAACCTCTT CCAAAGACAA CTCCCAGCCT GGCAAGGTCA CATGGCGGGG
  CTCTGCAGCT GGACTTGACC CTTAGAAGAG CGATCTGTCT GCCCCAATCC TGGCCTGCAG
  CCTGGCTGGG AGATGGAGGC AGTTGGGTCT TAGCAACCAG ATACTTCATT TAGATAATTC
  GAAGATCCTT TTCCTTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8598954	WI_WGS_4_117394921	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6193339					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119349995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14703	CpG island 14703	within coordinates
Rimkla	ribosomal modification protein rimK-like family member A	200 bp upstream
Rr598596	regulatory region 598596	1707 bp distal
Rr598597	regulatory region 598597	1787 bp distal
Rr598598	regulatory region 598598	within coordinates
Tssr43121	transcription start site region 43121	237 bp upstream
Tssr43122	transcription start site region 43122	180 bp upstream