rs6193359 SNP Detail

Summary

• ID
  rs6193359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58110909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTACCTG GAAGAGATGC
  AGATCAGCAT ATACGACCTT ATCATCATCG TAGCTTCTGA GCAGTTCAGC TTAAATCATG
  TGAAGCTGGC CATAACCATG CAGAGGATGA GAAAGAGGTT CTATGTCGTC TGGACCAAGC
  TGGACAGGGA CCTCAGCACA AGTACCTTCC CTGAACCCCA GCTACTGCAG AGTATCCAAA
  R
  GAATATCCGG GATAGTCTTC AGAAGGAGAA AGTGAAGGAG CACCCCATGT TCCTGGTATC
  TGTCTTTAAG CCTGAATCAC ATGACTTCCC AAAGCTTAGG GAGACACTAC AAAAAGACCT
  CCCTGTCATC AAGTACCACG GCCTCGTCGA AACCCTTTAC CAAGTCTGTG AGAAAACTGT
  TAATGAGAGA GTAGAGTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8598974	WI_WGS_11_58731454	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6193359					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58110909 () rs orientation: forward

Symbol	Name	Function Class
Irgm2	immunity-related GTPase family M member 2	Coding-NonSynonymous
Tssr101708	transcription start site region 101708	96 bp upstream
Tssr101709	transcription start site region 101709	398 bp upstream
Tssr101710	transcription start site region 101710	433 bp upstream
Tssr101711	transcription start site region 101711	594 bp upstream
Tssr101712	transcription start site region 101712	648 bp upstream
Tssr101713	transcription start site region 101713	966 bp upstream
Tssr101714	transcription start site region 101714	1015 bp upstream