rs6193363 SNP Detail

Summary

• ID
  rs6193363
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114859262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGAGGA AAATGGAGGG
  GTATGGAAGG TGGGTGTTAT TGTAATCACT TACAATAGAT ACATTGTACT CATGTGTGAC
  ATTAGGGAAG GATATATGAA TTGTAAAGCC CATCATTAAG TTTGTGTGTC AGACACTATG
  CCAGTCTTTG GAGAAGCCTG CCTTGCTCCC CTCTCCCCCC CCCCCCCCAG TCTCAGTTCC
  K
  GCCAGCCTCC CCGCTCAGCT CACACTCTCT CTCAGCTCTG TGTGAGGTGA TGGAGCTCTC
  CCATTGCTAG GCAGTTCATC CCTGAAAACA GGTGCAGGTG TCAGACAGCA GCATCTACCT
  ACACTGGGGA CCTGCCACCC TCCTGGGACT TAGTAGGTGT GTGCTTCTGG GCAGTCTGCA
  TTGCAGCAGG ACACTGGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8598978	WI_WGS_8_114067908	WI	MOUSE	f	SNP	G	T
ss145783804	ENSMUSSNP5945118	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6193363					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114859262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21082	CpG island 21082	928 bp proximal
Gm56821	predicted gene, 56821	within coordinates
Nudt7	nudix hydrolase 7	1052 bp upstream
Rr401147	regulatory region 401147	887 bp upstream
Tssr79531	transcription start site region 79531	1047 bp upstream
Tssr79532	transcription start site region 79532	1079 bp upstream
Tssr79533	transcription start site region 79533	1113 bp upstream
Tssr83006	transcription start site region 83006	1512 bp upstream
Tssr83007	transcription start site region 83007	927 bp upstream
Tssr83008	transcription start site region 83008	918 bp upstream