rs6193401 SNP Detail

Summary

• ID
  rs6193401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119350053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACGCCCGG GGAGGACCCG
  GCCCGGAGCC TGCGGAGCTG CGCAGCCTGC GGCGGCCGGG CGGGGCTGGG GCGACCCCGG
  GAACCGATGG GCCACTGGCT GGGTAGGCGC GGTGCTGCTC CCCCAGAGAA AAGTGCGAGT
  CTTGGTTGCA CCACCAACCT CTTCCAAAGA CAACTCCCAG CCTGGCAAGG TCACATGGCG
  R
  GGCTCTGCAG CTGGACTTGA CCCTTAGAAG AGCGATCTGT CTGCCCCAAT CCTGGCCTGC
  AGCCTGGCTG GGAGATGGAG GCAGTTGGGT CTTAGCAACC AGATACTTCA TTTAGATAAT
  TCGAAGATCC TTTTCCTTTT CTTACACCCC AGTTTGCACC AGCGCTTGAC CATCATAACC
  CCAGTGTCAT AAAAACAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8599017	WI_WGS_4_117394979	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6193401					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119350053 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14703	CpG island 14703	within coordinates
Rimkla	ribosomal modification protein rimK-like family member A	258 bp upstream
Rr598596	regulatory region 598596	1765 bp distal
Rr598597	regulatory region 598597	1845 bp distal
Rr598598	regulatory region 598598	within coordinates
Tssr43121	transcription start site region 43121	295 bp upstream
Tssr43122	transcription start site region 43122	238 bp upstream