rs6193571 SNP Detail

Summary

• ID
  rs6193571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181166277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTGCATT AACTTGAGTT
  CGTTTATTAA TGAAAAGTTT GTGTTCTCTA TTCTTAGTAT ATGATATTTA ATAAGTGTAT
  TAGTTAGGGT TTTACTGCTG TGAAGAGACA CCCTGAACAT GGCAACTCTT ATAAAGAACA
  GCATTTAATT GGGGCTGGCT TATGGTTGCA GGGGGTTATG CCGTTGTCAT TGGCAGCATG
  Y
  ATGCAGACAT GGTGCTGGAG ATGGAGCTGA GAGTTCTACA TCTTGATACA CAGGCAGCAA
  AGAGAGACTG TGTGCCACAC TGGGCATAGC CTAAGCATAG GAAACCTCAT AGCCTACCCC
  CAGAGTGAAA CAATTCCTCT AAAAAAGCCA TACTTTCTTA TAGTGCCACT CCCTATGGGC
  CAAGCATTCA AACACATGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8599187	WI_WGS_2_179855951	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6193571					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181166277 () rs orientation: forward

Symbol	Name	Function Class
Dnajc5	DnaJ heat shock protein family (Hsp40) member C5	within coordinates
Rr573027	regulatory region 573027	1230 bp distal
Rr573028	regulatory region 573028	1520 bp distal
Rr573029	regulatory region 573029	1051 bp proximal
Tssr22320	transcription start site region 22320	1280 bp upstream