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rs6193755 SNP Detail
Summary
  • ID
    rs6193755
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr15:62011166 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTTCCTTAG GACCCAGATT
    GGCATGTATT GAAGGCATAC TTTGTGCAGA TGGAGACTGG TAGTCTGTCC TCAGAGCAGC
    AGCCTAACCA GTGTGTGGCT CAGCATGAAG ACATGTGAGT CAGTTTCCTC CCTAGCATTG
    AGCCAGTGAG AATCCACACC CAGACCTCTG CCTGCCACCC TAATGCAGCT CTTGTTTACA
    Y
    AGGCCAGAGG TGCCCCTTCT CATGGGTCTG CCAATCCCCA AATACGGCCA CAGCCAGAAA
    GTGAGAGGGT GCCCCTTATA TAAGGCTCTG TGTGCTGGTC CCCAGACAAT GCCGTTTCCT
    CGCCTGGCCA TGTGTGACTG CATAACACCC CTTGACTCAT TTCCTCTGGA AAACTCGGCA
    GGGCCACTTT GCCCTGCTTC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
C57BL/6J
CAST/EiJ
CZECHII/EiJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
ss8599375 WI_WGS_15_62583908 WI MOUSE f SNP T C
ss48004632 NES12068325 PERLEGEN MM_PANEL2 f SNP T T T T C C T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
C57BL/6J
CAST/EiJ
CZECHII/EiJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
rs6193755 SNP T T T T T C C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss48004632 NES12068325 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:62011166 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Pvt1 Pvt1 oncogene within coordinates
Rr303301 regulatory region 303301 1766 bp distal
Rr313892 regulatory region 313892 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory