TTTTCCTTAG GACCCAGATT GGCATGTATT GAAGGCATAC TTTGTGCAGA TGGAGACTGG TAGTCTGTCC TCAGAGCAGC AGCCTAACCA GTGTGTGGCT CAGCATGAAG ACATGTGAGT CAGTTTCCTC CCTAGCATTG AGCCAGTGAG AATCCACACC CAGACCTCTG CCTGCCACCC TAATGCAGCT CTTGTTTACA Y AGGCCAGAGG TGCCCCTTCT CATGGGTCTG CCAATCCCCA AATACGGCCA CAGCCAGAAA GTGAGAGGGT GCCCCTTATA TAAGGCTCTG TGTGCTGGTC CCCAGACAAT GCCGTTTCCT CGCCTGGCCA TGTGTGACTG CATAACACCC CTTGACTCAT TTCCTCTGGA AAACTCGGCA GGGCCACTTT GCCCTGCTTC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
C57BL/6J |
CAST/EiJ |
CZECHII/EiJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss8599375 | WI_WGS_15_62583908 | WI | MOUSE | f | SNP | T | C | ||||||||
ss48004632 | NES12068325 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | C | C | T | C | ||
SNP Consensus Information | |||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
C57BL/6J |
CAST/EiJ |
CZECHII/EiJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
||||
rs6193755 | SNP | T | T | T | T | T | C | C | C | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss48004632 | NES12068325 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr15:62011166 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Pvt1 | Pvt1 oncogene | within coordinates | ||||||
Rr303301 | regulatory region 303301 | 1766 bp distal | ||||||
Rr313892 | regulatory region 313892 | within coordinates |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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