rs6193760 SNP Detail

Summary

• ID
  rs6193760
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132647969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGTGGGA GGGGAGTGTG
  AATGGTTTCT GTAGTACTCT GGCCTATGCA CTGGTCTTCC TTCTGATTTT AGGAAGCTTC
  AGGGCCAACA ACAGGGTTTG GGGTGTATGG AGAAGCAACA CTGGCTGGCT ACTTCCCTGC
  TATCTGTTAA TCTCAGCAAG GGCTCTTCTC ACTTGTCACC TTTGCCACAT AAAAAGGCAG
  Y
  GTTACATTGG ACTTCTGTGG TAGGAAGAGA CTCCAAGCAG CAGGGTGGGC CACAAGGTAA
  CCCAAAAGTG TCCCCCTCTG TCTCCCTTCC TGAAGGAACT GGTTGTGAAG CACTCAGGCA
  GCAAAGCCCC TCCAGCTGCT GTGACTTCAG GATCTGCTGC AGGGATCATA CAGAGGGCAA
  TCAAACTGAG CCCAGGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CAST/EiJ	CZECHII/EiJ	MOLF/EiJ
ss8599380	WI_WGS_2_133810208	WI	MOUSE	f	SNP	T		C
ss37463950	NES08987056	PERLEGEN	MM_PANEL2	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CAST/EiJ	CZECHII/EiJ	MOLF/EiJ
rs6193760					SNP	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463950	NES08987056	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132647969 () rs orientation: forward

Symbol	Name	Function Class
Trmt6	tRNA methyltransferase 6	within coordinates