rs6193786 SNP Detail

Summary

• ID
  rs6193786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:62011185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTCTCTGTCT
  GTGATAGGGT GGCACCGTGT TTTTTCCTTA GGACCCAGAT TGGCATGTAT TNAAGGCATA
  CTTTGTGCAG ATGGAGACTG GTAGTCTGTC CTCAGAGCAG CAGCCTAACC AGTGTGTGGC
  TCNGCATGAA GACATGTGAG TCAGTTTCCT CCCTAGCATT GAGCCAGTGA GAATCCACAC
  CCAGACCTCT GCCTGCCACC CTAATGCAGC TCTTGTTTAC ANAGGCCAGA GGTGCCCCTT
  Y
  TCATGGGTCT GCCAATCCCC AAATACGGCC ACAGCCAGAA AGTGAGAGGG TGCCCCTTAT
  ATAAGGCTCT GTGTGCTGGT CCCCAGACAA TGCCGTTTCC TCGCCTGGCC ATGTGTGACT
  GCATAACACC CCTTGACTCA TTTCCTCTGG AAAACTCGGC AGGGCCACTT TGCCCTGCTT
  CCTGCTTCTG TCACACAGAT TTCCTAGGAA TACCACCTCC CTGTGCTGCT TCGGGTGTCT
  GAGATCTGAG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8599406	WI_WGS_15_62583927	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6193786					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:62011185 () rs orientation: forward

Symbol	Name	Function Class
Pvt1	Pvt1 oncogene	within coordinates
Rr303301	regulatory region 303301	1785 bp distal
Rr313892	regulatory region 313892	within coordinates