rs6194419 SNP Detail

Summary

• ID
  rs6194419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24098815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTTAAAGT CCTTCAAGAT CGCTTCTTGC AGCCAGCTGA
  ATCAGTCTTG TGCTTGCTCA GATAAGGACG TTAATTCCTC CCTTCCGCCG TACCCTACCC
  Y
  GATCGGTCTG ACAACACTAC AGAAGACCCG GGATTCGAAC TCGAAATCTC CAGAGCTGCC
  CACCCAGCCA AACAGCAGGC CCGCCCAGAG AAACAATGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss8600041	WI_WGS_7_16637598	WI	MOUSE	f	SNP				T			C
ss46016230	mCV25416622	ABI	CRAMUS_MOUSE	f	SNP		T					C	T
ss60983365	NES16154572	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C		T	C	C		C	C	C
ss148598588	ENSMUSSNP5211948	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss322120423	CHEV_7_25184409	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs6194419					SNP	C	T	C	T	C	C	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60983365	NES16154572	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24098815 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	within coordinates
Gm74022	predicted gene, 74022	within coordinates
Rr643436	regulatory region 643436	1141 bp distal
Rr643437	regulatory region 643437	within coordinates
Rr643438	regulatory region 643438	240 bp proximal
Rr643439	regulatory region 643439	535 bp proximal
Rr643440	regulatory region 643440	1183 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	291 bp upstream
Tssr64959	transcription start site region 64959	216 bp upstream
Tssr64960	transcription start site region 64960	284 bp upstream
Tssr64961	transcription start site region 64961	423 bp upstream
Tssr64962	transcription start site region 64962	569 bp upstream
Tssr64963	transcription start site region 64963	587 bp upstream
Tssr64964	transcription start site region 64964	623 bp upstream
Tssr71075	transcription start site region 71075	468 bp downstream