rs6194450 SNP Detail

Summary

• ID
  rs6194450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:85870824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATGGAA GGGAGGGAGG
  AAGTTCTTTC TCTGGAAAAG TTTATAGACT TTAGTGGAGT ATTTTTCCGA AGTACTTTTG
  TATTGGGTTC ACTTGGCAAG TCAGTTTTAT TGTGGCTCAT AGTTTAGCCC CCAGAAGCTC
  ATGTTACTCT CCCAAGTTCC TAGTCAAACA CTGGTTTTAT TTTGCTTGTT TATTTGTTTG
  Y
  TACGGAATTT AAAGAAAAAT AATGTATTGA AGATCTGAAG AGCAATTCTA TGAAACTGAC
  ATTTCTCTAC ACACTATGTT GTGTCTATCA TTCTTAGACA CGAATCAGAC ACCATATACA
  CATGAAACAT ACTACCATGC TTCAACAATG TGAGAGAAGG AAAAATTCCC TCCCTTACAA
  AGGAACAACG TTATTGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8600072	WI_WGS_10_86204582	WI	MOUSE	f	SNP							T		C
ss47919937	NES12031956	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6194450					SNP	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47919937	NES12031956	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:85870824 () rs orientation: forward

Symbol	Name	Function Class
Fbxo7	F-box protein 7	within coordinates
Rr220687	regulatory region 220687	623 bp distal
Rr229206	regulatory region 229206	1225 bp distal
Tssr94947	transcription start site region 94947	1984 bp downstream
Tssr94948	transcription start site region 94948	1954 bp downstream
Tssr94949	transcription start site region 94949	1930 bp downstream
Tssr94950	transcription start site region 94950	1917 bp downstream
Tssr94951	transcription start site region 94951	1892 bp downstream