rs6194543 SNP Detail

Summary

• ID
  rs6194543
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:155617538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAA TTAAATTAGC GAGAAAGGAG
  K
  GTGTCTTACG TTGCATCGGC ACACC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss8600165	WI_WGS_1_156697686	WI	MOUSE	f	SNP									G									T
ss16373406	01.156.323	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	T	T	T	T	T	T	G	G	G	T	T	T	G	T	T	T	T	T	G	T	T	T	T	G	G	T	T	G	T	T	T	T	T	G	T	T	T	T	G	G	G	G	T	G	G	G
ss45045784	mCV24605510	ABI	CRAMUS_MOUSE	f	SNP	T		T						G											T
ss49518353	NES12776252	PERLEGEN	MM_PANEL2	f	SNP					T	T		T							G					T		T								G		T															G
ss145778988	ENSMUSSNP3890045	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs6194543					SNP	T	T	T	T	T	T	T	T	G	G	G	T	T	T	G	T	T	T	T	T	G	T	T	T	T	G	G	T	T	G	T	T	T	T	T	G	T	T	T	T	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49518353	NES12776252	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155617538 () rs orientation: forward

Symbol	Name	Function Class
Cpgi888	CpG island 888	within coordinates
Lhx4	LIM homeobox protein 4	within coordinates
Rr28763	regulatory region 28763	within coordinates
Tssr9541	transcription start site region 9541	717 bp upstream
Tssr14367	transcription start site region 14367	209 bp downstream
Tssr14368	transcription start site region 14368	333 bp downstream