rs6194627 SNP Detail

Summary

• ID
  rs6194627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142949426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGA ACTGCTAGCC AGGAGTAGGG
  R
  GAGGGAAGGC TCAATCTGGT CTGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8600249	WI_WGS_5_142095696	WI	MOUSE	f	SNP			A	G
ss45768647	mCV23387565	ABI	CRAMUS_MOUSE	f	SNP	G	A	A		G
ss144594719	ENSMUSSNP318990	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6194627					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142949426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16968	CpG island 16968	1157 bp distal
Fscn1	fascin actin-bundling protein 1	within coordinates
Gm72694	predicted gene, 72694	within coordinates
Rr378736	regulatory region 378736	within coordinates
Rr624075	regulatory region 624075	1826 bp distal
Rr624076	regulatory region 624076	766 bp proximal
Tssr49618	transcription start site region 49618	7 bp upstream