rs6195013 SNP Detail

Summary

• ID
  rs6195013
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142949432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCAGACC TCTTCTGCCC
  TCCTATGTCT GGGTCCAAGT CTCATTCCCA AGTCAGCCAA CTCCTCCCCC GGCTTTTTGA
  GGGTGAGCTG TTGGGTGGGT GTGCCGGGGA GGCCATTTTG GGCAGGCTTG CGTGGCAGGG
  AGGCGGGGCT GGGCTTCGGG GAAACACGTG TTGAACTGCT AGCCAGGAGT AGGGAGAGGG
  W
  AGGCTCAATC TGGTCTGGGG TTGTGAATCT TCCATGCAGA TTTGCTGCTT CCGGCTTCCT
  GGCCTCAGTT TCCCCATCTG AAAGCACAGA GGTACATTGA GCCAGGATCT TCCTGGGAGG
  TGGAGATCCT ATGAGAGTAG GATGGGGGGT AGTGGGTAGG GTCTTTTCCT CCTTGCTTCT
  CATGACCCTC CCAAGCCCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8600638	WI_WGS_5_142095702	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6195013					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142949432 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16968	CpG island 16968	1163 bp distal
Fscn1	fascin actin-bundling protein 1	within coordinates
Gm72694	predicted gene, 72694	within coordinates
Rr378736	regulatory region 378736	within coordinates
Rr624075	regulatory region 624075	1832 bp distal
Rr624076	regulatory region 624076	760 bp proximal
Tssr49618	transcription start site region 49618	1 bp upstream