rs6195044 SNP Detail

Summary

• ID
  rs6195044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:194474679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCTAGAA CATGGCCTCA
  AAGCACTGCC CAGTGCCTCT GTTTACAGTA GGAGGAAAGA AGTACTTTGC CCTTTTGCTC
  CATTTGGTCC CCACCTTAGC CTCAGCCTGG AGCTACCCTT TTACTTGTGT TCCAAGTTCC
  CAAATAGACA GTGAGGGGGA CTGGCACAAA GCCTCAAAAT GCATAGGGAA GTTGACAAAC
  Y
  GTACTCACTT CATTGCACTG ATTGTTTCTC CTATGCCTAT CAGTATCCCC AGATGCACCA
  TGATATGGGC ATTAAGTTGG AAAGGGACAG GAATGGAAAC TGATCCCTAG AACAGCAGAA
  AAACCAGGGA AGCAGTTTTG TTTGGAAGGA TTAAGACTGA TTTGAAGTTC TGACATCACT
  TCTACATACC AGCTCTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8600669	WI_WGS_1_196325263	WI	MOUSE	f	SNP							C		T
ss60362949	NES15866338	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6195044					SNP	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60362949	NES15866338	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194474679 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Plxna2	plexin A2			Intron
				Noncoding-Transcript-Variant
Rr426706	regulatory region 426706			966 bp proximal