rs6195604 SNP Detail

Summary

• ID
  rs6195604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9822558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAGAATT CCAACTCTAA
  CAACAAAAAT AACAGGAAAC AACAATGACT TTTCCTTAAT ATCTCTTAAT ATTAATTGAC
  TCAATTCCCC AATAAAAAGA CATATACTAA CAGACTGGTT ACATAAACAG GACCCAACAT
  TTTGCTGCAT GGAAAAAACC CACCTCAGTG ACAAAGACAG ACATTACCTT AGAGTCATAG
  R
  CCTGCAAAAA ATTTTCCAAG CAACTGATCC CAAGAAACAA GCTGGAGCAG CCATTCCAAT
  ATTGAATAAA ATCGACTTTC AACCTAAAGT TATCAAAAAA GATAAGAAGG GACACTTCAT
  ACACATCAAA GGTAAAATTT ACCAATATGA ACTCTCAATT CTGAACATCT ATGCTCCAAA
  TGCAAGGGCA TCTATACTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8601229	WI_WGS_11_9789843	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6195604					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9822558 () rs orientation: forward

Symbol	Name	Function Class
Tssr106858	transcription start site region 106858	1179 bp downstream
Tssr106859	transcription start site region 106859	1250 bp downstream