rs6195921 SNP Detail

Summary

• ID
  rs6195921
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33571415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCAGGCC CTGTGGCAGC
  GTCTCAGTCA CTTACCACAA GGAAACAATG AGTTTCAAAC TACTTCTATA CATCAAAAGA
  GTACATGGGT AAAATATAGA TATACAGACA ATTGATGAAC ATAAACTACT AGGCTTGTTA
  CATCTAAATG AAGAAAAAAA AAAACCGTGG GGGGGACTCT CAGCCTCTGC AAGAAGCAGT
  Y
  GGGAGCTGTC TGATGAAAGG CAGGAGTGGA CCAGTCATCT GAGCGCAGTA GGAGTTTTGA
  GTTGTGGAAG ACATTGTTGT AGCGAACCAG GCCTGAAGGC CCACCTGTAG GGGTTGTAAA
  CGTGGATTCA CAGTGTGAAA TTCTGAGCGT TTTCACTTGA GTCAGAATGA TTAAAAACTG
  GTTTGATGAA ACCTATTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8601548	WI_WGS_18_33596222	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6195921					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33571415 () rs orientation: forward

Symbol	Name	Function Class
Nrep	neuronal regeneration related protein	within coordinates
Tssr152756	transcription start site region 152756	43 bp upstream
Tssr152757	transcription start site region 152757	14 bp upstream
Tssr152758	transcription start site region 152758	259 bp downstream
Tssr152759	transcription start site region 152759	379 bp downstream