rs6196017 SNP Detail

Summary

• ID
  rs6196017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:59520548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GGATCAGTGC GGCACACACA CTCATAGTCG GTCACTCTCT CTCTCTCTCC
  Y
  GGAGCGCGTC TCGCTCGCTC ACACGCCTGG AGCCCAGGAG CGCGCAGGAT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8601644	WI_WGS_15_60074263	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6196017					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:59520548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7127	CpG island 7127	within coordinates
Gm56697	predicted gene, 56697	within coordinates
Rr502887	regulatory region 502887	522 bp distal
Rr502888	regulatory region 502888	339 bp distal
Rr502889	regulatory region 502889	36 bp distal
Rr502890	regulatory region 502890	748 bp proximal
Rr502891	regulatory region 502891	913 bp proximal
Rr502892	regulatory region 502892	1709 bp proximal
Trib1	tribbles pseudokinase 1	within coordinates
Tssr4603	transcription start site region 4603	1571 bp downstream
Tssr131384	transcription start site region 131384	392 bp downstream
Tssr131385	transcription start site region 131385	330 bp downstream
Tssr131386	transcription start site region 131386	268 bp downstream
Tssr131387	transcription start site region 131387	162 bp downstream
Tssr131388	transcription start site region 131388	138 bp downstream
Tssr131389	transcription start site region 131389	110 bp downstream
Tssr131390	transcription start site region 131390	12 bp downstream
Tssr131391	transcription start site region 131391	within coordinates
Tssr134444	transcription start site region 134444	563 bp upstream
Tssr134445	transcription start site region 134445	531 bp upstream
Tssr134446	transcription start site region 134446	1904 bp downstream