rs6196141 SNP Detail

Summary

• ID
  rs6196141
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:194474900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CCTCAAAATG
  CATAGGGAAG TTGACAAACN GTACTCACTT CATTGCACTG ATTGTTTCTC CTATGCCTAT
  CAGTATCCCC AGATGCACCA TGATATGGGC ATTAAGTTGG AAAGGGACAG GAATGGAAAC
  TGATCCCTAG AACAGCAGAA AAACCAGGGA AGCAGTTTTG TTTGGAAGGA TTAAGACTGA
  TTTGAAGTTC TGACATCACT TCTACATACC AGCTCTTTTC TGTGCTGTCA ACTGTTTCAC
  M
  CAGGCATCTG TTTCTGGTCA TGAAGCCTGT CTGTGTATAT GTTcacacac acacacacac
  acacacacac acacacaTGC GCGCGCGCGA GCACCACATG CTAGGTAGAA TATACTAGAG
  TGTTCTGGGC TATTCCCTGT GACAGCCCGG TTCCCACAAT GATACTGAGC TAACTGTGGT
  GCAGAGTAAA AGTTAGGAGA GCAAGCTGGA ATCTGCTTTT TTTCCCCCTA TGCCCTGCAA
  TGGGTCTGTT                                                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8601768	WI_WGS_1_196325484	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6196141					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194474900 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Plxna2	plexin A2			Intron
				Noncoding-Transcript-Variant
Rr426706	regulatory region 426706			745 bp proximal