rs6196157 SNP Detail

Summary

• ID
  rs6196157
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142949683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT CCCCACACTG CCCACCCTGG
  Y
  TTACTTGTTG GGTTCTAATG CTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8601784	WI_WGS_5_142095953	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6196157					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142949683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16968	CpG island 16968	1414 bp distal
Fscn1	fascin actin-bundling protein 1	within coordinates
Gm72694	predicted gene, 72694	within coordinates
Rr378736	regulatory region 378736	within coordinates
Tssr49618	transcription start site region 49618	239 bp downstream