rs6196200 SNP Detail

Summary

• ID
  rs6196200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142949713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT GGGTTCTAAT GCTTTCAAAG
  R
  ATTTTGTCCC CATCATTTCT AGGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8601827	WI_WGS_5_142095983	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6196200					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142949713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16968	CpG island 16968	1444 bp distal
Fscn1	fascin actin-bundling protein 1	within coordinates
Gm72694	predicted gene, 72694	within coordinates
Rr378736	regulatory region 378736	within coordinates
Rr624076	regulatory region 624076	479 bp proximal
Tssr49618	transcription start site region 49618	269 bp downstream