rs6196376 SNP Detail

Summary

• ID
  rs6196376
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13213503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGGGAG GGGGAACGAG
  AGAGAGCAAG CGCGCAAGAG CGCCAAGCAG TGACTGCGCA GAGCCACGCC CCAATCTGAA
  TGGTTCCCAG CTCAGATAAG AAACCCCCAC AGCTGAAGTC CCATACAGCC CCCTTGGAGA
  AACGGCCACT TCCTGTTTAC TTTACTGCCT TCCAGCTGGG GGCGGGGGGA GCAGTGATGG
  M
  AGCCATTGCT TGTAGCTGTA GGGAAGAATC AAAACTGCTG GATCAGGGCT GCAATTGCAG
  CATTGCATCT CATTACTCTG CCCGCCCCCG GATAAGGCAG AGCTAATACC ATAATAATAC
  CAAGGAGGTG CGGGGCCTCG CGGCAGGTGC TGTCATCTAG CTTTGAGTAA CCACGCAGTA
  TCCTTCCGGG GGCAGAGATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8602004	WI_WGS_X_10422168	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6196376					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13213503 () rs orientation: forward

Symbol	Name	Function Class
Gm34661	predicted gene, 34661	within coordinates
Rr370548	regulatory region 370548	within coordinates
Rr394754	regulatory region 394754	1970 bp downstream
Rr690228	regulatory region 690228	12 bp distal
Tssr163015	transcription start site region 163015	1942 bp upstream