rs6196387 SNP Detail

Summary

• ID
  rs6196387
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13213514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAACGAGA GAGAGCAAGC
  GCGCAAGAGC GCCAAGCAGT GACTGCGCAG AGCCACGCCC CAATCTGAAT GGTTCCCAGC
  TCAGATAAGA AACCCCCACA GCTGAAGTCC CATACAGCCC CCTTGGAGAA ACGGCCACTT
  CCTGTTTACT TTACTGCCTT CCAGCTGGGG GCGGGGGGAG CAGTGATGGA AGCCATTGCT
  W
  GTAGCTGTAG GGAAGAATCA AAACTGCTGG ATCAGGGCTG CAATTGCAGC ATTGCATCTC
  ATTACTCTGC CCGCCCCCGG ATAAGGCAGA GCTAATACCA TAATAATACC AAGGAGGTGC
  GGGGCCTCGC GGCAGGTGCT GTCATCTAGC TTTGAGTAAC CACGCAGTAT CCTTCCGGGG
  GCAGAGATGG GGAACAGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8602016	WI_WGS_X_10422179	WI	MOUSE	f	SNP							T	A
ss46841457	NES10964933	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T			T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6196387					SNP	T	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46841457	NES10964933	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13213514 () rs orientation: forward

Symbol	Name	Function Class
Gm34661	predicted gene, 34661	within coordinates
Rr370548	regulatory region 370548	within coordinates
Rr394754	regulatory region 394754	1981 bp downstream
Rr690228	regulatory region 690228	23 bp distal
Tssr163015	transcription start site region 163015	1953 bp upstream