rs6196819 SNP Detail

Summary

• ID
  rs6196819
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:151954622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACACAGAATG
  AGTTTCAAAA CAAATAACCA tctggaggct gaagcaggag gantgccaat tggagaccag
  cctggtctac aagcaagacc ctgtctagaa aaaaaaaaaa aAAAGTACAA GAATCAGTAA
  ATAgccgggc gtggtggngc acgcctttaa tcccagcact cgggaggcag aggcaggtgg
  atttctgagt tcgaggccag cctggtctac aaaatgagtt ctaggacagc caggactaca
  Y
  anagaaaccc tgtctcaaaa acaccaaaaa aaaAAAAAAA AATCAGTAAA TAATCACAGG
  GGGGAGGAGT TTAGAATGAA ACTGCATTCA AATCCATGTG TTCACAATGA TATTTACATA
  AGCAATACAA CAGCTacctt actggtctca nttggaagat aggagaaaat caactcatta
  ttttgaacat taattaaaat agaaggaaag aaaccaatca ttaatTATAC TGAAAGACAT
  ATACCTCAAG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8602448	WI_WGS_1_153008935	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6196819					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151954622 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	within coordinates
Gm71151	predicted gene, 71151	1960 bp downstream
Rr420414	regulatory region 420414	1275 bp distal