rs6196820 SNP Detail

Summary

• ID
  rs6196820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:151954624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACAGAATGAG
  TTTCAAAACA AATAACCAtc tggaggctga agcaggagga ntgccaattg gagaccagcc
  tggtctacaa gcaagaccct gtctagaaaa aaaaaaaaaA AAGTACAAGA ATCAGTAAAT
  Agccgggcgt ggtggngcac gcctttaatc ccagcactcg ggaggcagag gcaggtggat
  ttctgagttc gaggccagcc tggtctacaa aatgagttct aggacagcca ggactacana
  R
  agaaaccctg tctcaaaaac accaaaaaaa aAAAAAAAAA TCAGTAAATA ATCACAGGGG
  GGAGGAGTTT AGAATGAAAC TGCATTCAAA TCCATGTGTT CACAATGATA TTTACATAAG
  CAATACAACA GCTaccttac tggtctcant tggaagatag gagaaaatca actcattatt
  ttgaacatta attaaaatag aaggaaagaa accaatcatt aatTATACTG AAAGACATAT
  ACCTCAAGGT                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8602449	WI_WGS_1_153008937	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6196820					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151954624 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	within coordinates
Gm71151	predicted gene, 71151	1958 bp downstream
Rr420414	regulatory region 420414	1277 bp distal