rs6197022 SNP Detail

Summary

• ID
  rs6197022
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64301580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA AAGCACCACT TCTTTTTGGG
  S
  GTTGGGGGGT TGTTGTTGGT TTTGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8602652	WI_WGS_13_62978670	WI	MOUSE	f	SNP	C	G
ss324379422	CHEV_13_64255074	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6197022					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64301580 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5773	CpG island 5773	99 bp distal
Cpgi5774	CpG island 5774	314 bp proximal
Gm47513	predicted gene, 47513	within coordinates
Gm61554	predicted gene, 61554	within coordinates
Rr273318	regulatory region 273318	1421 bp proximal
Rr281559	regulatory region 281559	within coordinates
Rr403820	regulatory region 403820	1287 bp downstream
Rr403821	regulatory region 403821	129 bp downstream
Tssr120196	transcription start site region 120196	46 bp downstream
Tssr123017	transcription start site region 123017	1311 bp upstream
Tssr123018	transcription start site region 123018	1018 bp upstream
Tssr123019	transcription start site region 123019	621 bp upstream
Tssr123020	transcription start site region 123020	577 bp upstream
Tssr123021	transcription start site region 123021	559 bp upstream
Tssr123022	transcription start site region 123022	489 bp upstream
Zfp367	zinc finger protein 367	567 bp upstream