rs6197041 SNP Detail

Summary

• ID
  rs6197041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:59520687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AGACTAATTG CTTTGGGAAG TGCGTTTGCT CGGAGAAGCC GAGGAGCCTG
  Y
  GGAATCCTGT CCTCGAGGCT CAACACCCGG GAACTCGGGC CGTCTCCACG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8602671	WI_WGS_15_60074402	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6197041					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:59520687 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7127	CpG island 7127	within coordinates
Gm56697	predicted gene, 56697	within coordinates
Trib1	tribbles pseudokinase 1	within coordinates
Tssr4603	transcription start site region 4603	1432 bp downstream
Tssr131384	transcription start site region 131384	531 bp downstream
Tssr131385	transcription start site region 131385	469 bp downstream
Tssr131386	transcription start site region 131386	407 bp downstream
Tssr131387	transcription start site region 131387	301 bp downstream
Tssr131388	transcription start site region 131388	277 bp downstream
Tssr131389	transcription start site region 131389	249 bp downstream
Tssr131390	transcription start site region 131390	151 bp downstream
Tssr131391	transcription start site region 131391	133 bp downstream
Tssr131392	transcription start site region 131392	1886 bp upstream
Tssr134444	transcription start site region 134444	702 bp upstream
Tssr134445	transcription start site region 134445	670 bp upstream
Tssr134446	transcription start site region 134446	1765 bp downstream