rs6197383 SNP Detail

Summary

• ID
  rs6197383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:25366295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCTTAT GTTAAGTCTT
  TTCATGGTAT CCCAGATCTC CTGGATGTTT TGTATCAGGA ATTTTTTAAA TTTAACATTT
  CTTTGACTCA AGTATCAATT TCTCCTATTG TATCTTCTTC CCCTGAGGGT CTGTCTTCCA
  TCTCCTGTAT TCTGTTGGTG ATGCTTGCAC CTCTTGTTCC TGTTCTCTTC CCTAGGTTTT
  Y
  CATCTCCAGG ATTTCCTCAG TTTGTGTTTT CTTTATTGCT TCTGTTTCCA CTTTCAGGTG
  TTGCACAGTT TTATTTATTT TTATTACCTG TTTATTTATA TTTTTTCTGT ATATATTTAT
  GGGATTTATT TGTTTCCTCT TTAAAGACCT CTAGCTGTTT GATTGTATTT TCCTGGTTTT
  TTAAAAGGAT TTTTTTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8603015	WI_WGS_18_25356821	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6197383					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:25366295 () rs orientation: forward

Symbol	Name	Function Class
AW554918	expressed sequence AW554918	within coordinates
Gm58918	predicted gene, 58918	1054 bp upstream
Tssr150327	transcription start site region 150327	1047 bp upstream
Tssr150328	transcription start site region 150328	1063 bp upstream
Tssr150329	transcription start site region 150329	1080 bp upstream