rs6197384 SNP Detail

Summary

• ID
  rs6197384
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:25366296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTTATG TTAAGTCTTT
  TCATGGTATC CCAGATCTCC TGGATGTTTT GTATCAGGAA TTTTTTAAAT TTAACATTTC
  TTTGACTCAA GTATCAATTT CTCCTATTGT ATCTTCTTCC CCTGAGGGTC TGTCTTCCAT
  CTCCTGTATT CTGTTGGTGA TGCTTGCACC TCTTGTTCCT GTTCTCTTCC CTAGGTTTTC
  Y
  ATCTCCAGGA TTTCCTCAGT TTGTGTTTTC TTTATTGCTT CTGTTTCCAC TTTCAGGTGT
  TGCACAGTTT TATTTATTTT TATTACCTGT TTATTTATAT TTTTTCTGTA TATATTTATG
  GGATTTATTT GTTTCCTCTT TAAAGACCTC TAGCTGTTTG ATTGTATTTT CCTGGTTTTT
  TAAAAGGATT TTTTTTTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8603016	WI_WGS_18_25356822	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6197384					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:25366296 () rs orientation: forward

Symbol	Name	Function Class
AW554918	expressed sequence AW554918	within coordinates
Gm58918	predicted gene, 58918	1053 bp upstream
Tssr150327	transcription start site region 150327	1046 bp upstream
Tssr150328	transcription start site region 150328	1062 bp upstream
Tssr150329	transcription start site region 150329	1079 bp upstream