rs6197468 SNP Detail

Summary

• ID
  rs6197468
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:4109306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTGGTT TTTGAAAAAA
  GACATAAAAG GAGAAGAGAC TATTTAGGGG GCCAGAGAGG GAACAGGAGG GGCAGTGGGT
  AAGCTTGATC AAGAAACATT GTGTCTGGGT GGAAATGTCA CAATGAGACT TTTACTGTTT
  AGAAAGTAAA GAAGAGATAC TCTTTTCAAA TGAAAACCAG AGCCCAGTAG CTGAAGTTAC
  K
  TTCTAGGTAA CCTGTGATTG ATTGCTGTCC ATCAGTTTCC CCTTAACAAT TTACACAATT
  AAGCATGGAC TGTGAACAGA ACCTTTTCTT CTACAAGAAA TTCATGGTTT CATTTTCATG
  CTTTCTTGAT TTATTGGAGT TCACTCTCAT ACACATGCAG ACAGCCTCCA GTTTTTGTCT
  CTGGACTATT GCTTTAAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8603100	WI_WGS_13_3861920	WI	MOUSE	f	SNP						T		G
ss47339154	NES11380233	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		T		T	T	G		G	T	G	T		T
ss324212501	CHEV_13_4058552	CHEVERUD	SCREENING_POP	f	SNP												G					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6197468					SNP	T	T	T	T	T	T	T	G	T	T	G	G	G	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47339154	NES11380233	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:4109306 () rs orientation: forward

Symbol	Name	Function Class
Akr1c14	aldo-keto reductase family 1, member C14	within coordinates
Rr474440	regulatory region 474440	902 bp distal
Rr474441	regulatory region 474441	130 bp proximal
Tssr118214	transcription start site region 118214	259 bp upstream
Tssr118215	transcription start site region 118215	281 bp upstream
Tssr118216	transcription start site region 118216	365 bp upstream