rs6197506 SNP Detail

Summary

• ID
  rs6197506
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64301646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGAAGAGGGG
  GTGTAAAGAG GGTAGGAGTC TGGAGAAGTT GCAGTGGAGA GGGCCCTCCC CATCGCCCCA
  CCCAATCCGC CCCCTCCCGC GCGCAGCCAG TTTAAAGGGC TGAGGCCGCG CCCGTCCCAC
  CCCACCCCAC CCACGGCTGC TCAAGGCGCC AGCAAAGCAC CACTTCTTTT TGGGNGTTGG
  GGGGTTGTTG TTGGTTTTGt tttgtttttc gagacagggt ttctctgcat agccctagct
  K
  ccctggaact cactttgtag accaagctgg cctcgaactc agaaatccac ctgcctttgc
  ctcccaagtg ctgggattaa aggcatgagc caccaccgcc cggcttgttt ttgttttgag
  acagggtctc tatagagtcc tggctgccct gtaactccct atgtagggac caggagggcc
  tcgaagtcag agatcccatt cgcccccccc cctccataca cacacacacc cagtactggg
  actaaagacg                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8603138	WI_WGS_13_62978736	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6197506					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64301646 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5773	CpG island 5773	165 bp distal
Cpgi5774	CpG island 5774	248 bp proximal
Gm47513	predicted gene, 47513	within coordinates
Gm61554	predicted gene, 61554	within coordinates
Rr273318	regulatory region 273318	1355 bp proximal
Rr281559	regulatory region 281559	within coordinates
Rr403820	regulatory region 403820	1353 bp downstream
Rr403821	regulatory region 403821	195 bp downstream
Tssr120196	transcription start site region 120196	112 bp downstream
Tssr123017	transcription start site region 123017	1377 bp upstream
Tssr123018	transcription start site region 123018	1084 bp upstream
Tssr123019	transcription start site region 123019	687 bp upstream
Tssr123020	transcription start site region 123020	643 bp upstream
Tssr123021	transcription start site region 123021	625 bp upstream
Tssr123022	transcription start site region 123022	555 bp upstream
Zfp367	zinc finger protein 367	633 bp upstream