rs6198658 SNP Detail

Summary

• ID
  rs6198658
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64301908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGA CTAAAGACGT GAGTCACCAC
  K
  CCTGCCTAAG GGCATGGGTT CTTAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8604291	WI_WGS_13_62978998	WI	MOUSE	f	SNP	T	G
ss324379427	CHEV_13_64255402	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6198658					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64301908 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5773	CpG island 5773	427 bp distal
Cpgi5774	CpG island 5774	within coordinates
Gm47513	predicted gene, 47513	within coordinates
Gm61554	predicted gene, 61554	within coordinates
Gm61557	predicted gene, 61557	1901 bp downstream
Rr273318	regulatory region 273318	1093 bp proximal
Rr281559	regulatory region 281559	within coordinates
Rr403820	regulatory region 403820	1615 bp downstream
Rr403821	regulatory region 403821	457 bp downstream
Tssr120196	transcription start site region 120196	374 bp downstream
Tssr123017	transcription start site region 123017	1639 bp upstream
Tssr123018	transcription start site region 123018	1346 bp upstream
Tssr123019	transcription start site region 123019	949 bp upstream
Tssr123020	transcription start site region 123020	905 bp upstream
Tssr123021	transcription start site region 123021	887 bp upstream
Tssr123022	transcription start site region 123022	817 bp upstream
Zfp367	zinc finger protein 367	895 bp upstream