rs6199082 SNP Detail

Summary

• ID
  rs6199082
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:134678895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCA TCATAATCAT AACAACACAA
  Y
  GATTGGAATT AAAGCAGAAG TAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8604717	WI_WGS_2_135856335	WI	MOUSE	f	SNP				T	C
ss45270571	mCV27542884	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T		T
ss147637377	ENSMUSSNP5696697	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320514835	CHEV_2_134662711	CHEVERUD	SCREENING_POP	f	SNP							C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6199082					SNP	C	C	T	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134678895 () rs orientation: forward

Symbol	Name	Function Class
Plcb1	phospholipase C, beta 1	Intron
Rr565690	regulatory region 565690	740 bp distal
Rr565691	regulatory region 565691	575 bp distal
Rr565692	regulatory region 565692	1289 bp proximal