rs6199882 SNP Detail

Summary

• ID
  rs6199882
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53424276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCCACAC ACAGCTTTCA
  AAGAGGGAGG CCCAGTCTTT CAGAGGCTTC TAGCCTCACC AGTCACCAAA TGTCACATTA
  ATGAGGGGGA AGGGTAAGAA AGAGTTGTTG GGAACAGAAG AGTAAGACAG AAGGTGGTAA
  TTGGAGCAGA GAAGGAAGGA CCCAGACCCG GGGCCAGTAA GAGGTCAAAA AGAGGGCACG
  R
  GAAAGGAGTG TAGCCAAATA CAAGTCAGCA CAAGCCACCA GTGTCTCGGC CTCCACGATG
  GCAGCCGGAG GGCGAGGAGG CGGGTCTTGG TTTGAGGCCC CGCCTTATGC CGCGCCCTTC
  CTCGGATGAC CCCGCCCCAC TAAGAGGCGC CCAGGCCCCG CCTCCGAGCT CAGAGGCTCC
  TCCCTGCACT CCGATCCCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8605517	WI_WGS_5_52334865	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6199882					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53424276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15867	CpG island 15867	within coordinates
Gm40303	predicted gene, 40303	within coordinates
Rr399079	regulatory region 399079	within coordinates
Smim20	small integral membrane protein 20	172 bp upstream
Tssr46209	transcription start site region 46209	169 bp upstream
Tssr46210	transcription start site region 46210	196 bp upstream