rs6199981 SNP Detail

Summary

• ID
  rs6199981
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:35126263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACCCACC AAAAAGAAAA
  AAATCTCCAA GGACCAAACC TCGAAGAAAT GCACCTGAAA CCATGGAGTA GAAGCCATAA
  AAAAAATCCA CGTCAGAAGA CAGGAAAATA TCTTATTTTT TTGTGAACAG TGTTATAATG
  CACACAGGAT TAGAACTATA AAATCTATAT ATAGAGAGAT AACTGATTTC ATTTCTTTTG
  S
  ATAAATGCCC ACAAGTGAGA TTGCTGGATC GTATAATTCA CTGCAAATTA TGCAGGGGCA
  TTTTTATGTT TTAATTTTCT ATTTTTAATC CTTTTACCCC TTACTTTATT ACAAAAGCCA
  AGGTCTCCAA TACAATGTGG CAGAAGTATG CATCCTTGCT ATTTTTTTCT CATTCTGAGG
  TGGAAAAATC AATAAAAGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8605616	WI_WGS_13_34312200	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6199981					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:35126263 () rs orientation: forward

Symbol	Name	Function Class
Gm8245	predicted gene 8245	651 bp downstream
Tex56	testis expressed 56	within coordinates